Steven J. Baskauf 2010-04-17 2010-11-25 SLPIG Standardized View Hierarchy v. 0.9.2 SERNEC Live Plant Imaging Group and bioimages.vanderbilt.edu This document specifies the hierarchical relationships among the standardized views for live plant images described in Baskauf and Kirchoff (2008) Vulpina 7:16-30. http://www.cals.ncsu.edu/plantbiology/ncsc/vulpia/pdf/Baskauf_&_Kirchoff_Digital_Plant_Images.pdf The standard views are modeled as subclasses of Morphbank views defined in http://www.morphbank.net/Show/?id=470716 The comments about individual view categories refer to the descriptions in Vulpina 7:16-30 In v. 0.9.1 placeholder categories were added for ferns, cacti, and mosses, and uncategorized Morphbank views were added. Corrected missing MB subclass for 010303 v. 0.9.2 Minor update which corrected erroneous MB subclass statement for 020404 has standard view This is a definition of a view as the property used by Baskauf and Kirchoff (2008) Vulpina 7:16-30 standard view type vocabulary The set of classes used to categorize the SLPIG standard view of a StillImage. standard view This is the root class for all of the standardized views. unspecified Assigned to images for which a view has not been specified. woody angiosperms I. Woody angiosperm views herbaceous angiosperms II. Herbaceous angiosperm views gymnosperms III. Gymnosperm views ferns IV. Fern views cacti V. Cacti views mosses VI. Moss views unspecified placeholder subclass for unspecified view instance whole plant Whole plant (unspecified group) unspecified Unspecified woody angiosperm whole tree (or vine) I.A. Whole tree (or vine) bark I.B. Bark (vertical orientation) twig I.C. Twig leaf I.D. Leaf inflorescence I.E. Inflorescence and flower. If imperfect, photograph flowers of both sexes fruit I.F. Fruit seed Seed (separated from fruit after SERNEC LPIG comment period) unspecified Unspecified herbaceous angiosperm whole plant II.A. Whole plant stem II.B. Stem leaf II.C. Leaf inflorescence II.D. Inflorescence and flower. If imperfect, flowers of both sexes fruit II.E. Fruit seed Seed (separated from fruit after SERNEC LPIG comment period) unspecified Unspecified gymnosperm whole tree III.A. Whole tree bark III.B. Bark (same as woody angiosperms) twig III.C. Twig leaf III.D. Leaf (needle or scale) cone III.E. Cone seed Seed (separated from fruit after SERNEC LPIG comment period) unspecified Unspecified fern whole plant Whole plant unspecified Unspecified cactus whole plant Whole plant unspecified Unspecified moss whole gametophyte Whole gametophyte unspecified view assignment for images for which a standardized view has not yet been determined or for which a standardized view is not appropriate unspecified Entire organism - unspecified unspecified Tree part - unspecified unspecified Entire tree - unspecified general I.A.1. entire tree - summer winter I.A.2. entire tree - winter view up trunk I.A.3. view up trunk, if tree is large (important in conditions where the whole tree cannot be photographed) unspecified unspecified bark of a large tree I.B.1. bark of a large tree of a medium tree or large branch I.B.2. bark of a medium tree or the bark of a large branch oriented vertically of a small tree or small branch I.B.3. bark of a small tree or the bark of a small branch oriented vertically unspecified unspecified twig orientation of petioles I.C.1. horizontal view of twig showing the orientation of the petioles and axillary buds winter overall I.C.2. horizontal view of a winter twig showing a terminal bud and several axillary buds close-up winter leaf scar/bud I.C.3. close-up of winter twig showing leaf scar and lateral bud (vertical orientation) close-up winter terminal bud I.C.4. close-up of winter twig showing terminal bud (vertical orientation) unspecified unspecified leaf whole upper surface I.D.1. upper (adaxial) surface of whole leaf oriented with apex downward; part of the lower (abaxial) surface of another leaf should be visible margin of upper + lower surface I.D.2. margin of upper surface of leaf; part of the lower surface of another leaf with major veins visible should be shown behind the upper surface showing orientation on twig I.D.3. several leaves showing their orientation on the twig unspecified unspecified inflorescence whole - unspecified I.E.1.a. whole inflorescence (sex unspecified); refinement after SERNEC LPIG comment period whole - female I.E.1.b. whole inflorescence (female); refinement after SERNEC LPIG comment period whole - male I.E.1.c. whole inflorescence (male); refinement after SERNEC LPIG comment period lateral view of flower I.E.2. lateral view of flower frontal view of flower I.E.3. frontal view of flower ventral view of flower + perianth I.E.4. ventral view of flower showing perianth close-up of flower interior I.E.5. if the flower is large, a close-up of its interior unspecified unspecified fruit as borne on plant I.F.1. fruit as borne on the plant lateral or general close-up I.F.2. lateral or general close-up view of fruit section or open I.F.3. section of fruit, or open fruit if dehiscent immature I.F.5. young fruit unspecified unspecified seed general view general view of seeds (separated from fruit after SERNEC LPIG comment period) unspecified plant part - unspecified unspecified whole plant - unspecified juvenile II.A.1. whole juvenile plant in flower - general view II.A.2. whole plant in flower in fruit II.A.3. whole plant in fruit unspecified unspecified stem showing leaf bases II.B.1. stem showing orientation of leaf bases or petioles (vertical orientation) unspecified unspecified leaf basal or on lower stem II.C.1. basal leaves, or leaves on the lower stem, with apex down on upper stem II.C.2. leaf on the upper stem, with the apex up margin of upper + lower surface II.C.3. margin of upper surface of leaf; part of the lower surface of another leaf with major veins visible should be shown behind the upper surface unspecified unspecified inflorescence whole - unspecified II.D.1.a. whole inflorescence (sex unspecified); refinement after SERNEC LPIG comment period whole - female II.D.1.b. whole inflorescence (female); refinement after SERNEC LPIG comment period whole - male II.D.1.c. whole inflorescence (male); refinement after SERNEC LPIG comment period lateral view of flower II.D.2. lateral view of flower frontal view of flower II.D.3. frontal view of flower ventral view of flower + perianth II.D.4. ventral view of flower showing perianth close-up of flower interior II.D.5. if the flower is large, a close-up of its interior unspecified unspecified fruit as borne on plant II.E.1. fruit as borne on the plant lateral or general close-up II.E.2. lateral or general close-up view of fruit section or open II.E.3. section of fruit, or open fruit if dehiscent juvenile II.E.4. young fruit unspecified unspecified seed general view general view of seeds (separated from fruit after SERNEC LPIG comment period) unspecified Tree part - unspecified unspecified unspecified entire tree general III.A.1. entire tree view up trunk III.A.2. looking up trunk, if tree is large (important in conditions where the whole tree cannot be photographed) unspecified unspecified bark of a large tree III.B.1. bark of a large tree of a medium tree or large branch III.B.2. bark of a medium tree or the bark of a large branch oriented vertically of a small tree or small branch III.B.3. bark of a small tree or the bark of a small branch oriented vertically unspecified unspecified twig after fallen needles III.C.1. horizontal view of twig after needles/scales have fallen showing attachment of needles III.C.2. horizontal view showing attachment of needles or scales unspecified unspecified needles entire needles III.D.1. entire needles (or scales), apex down showing orientation on twig III.D.2. many needles (or scales) showing orientation on twig unspecified unspecified cones male III.E.1. male cones female - mature open III.E.2. female cone, mature, open female - closed III.E.3. female cone, nearly mature, closed female - receptive III.E.4. female cone, receptive one year-old female III.E.5. one year-old female cone (in species requiring two years of cone development) unspecified unspecified seeds general view general view of seeds (separated from fruit after SERNEC LPIG comment period) unspecified Fern part - unspecified unspecified Entire plant - unspecified unspecified Cactus part - unspecified unspecified Entire plant - unspecified unspecified Moss part - unspecified unspecified Entire gametophyte - unspecified